Whole Wheat Pumpkin Muffins

Featured in: Sweet & Simple Treats

Experience the rich flavors of autumn with moist whole wheat pumpkin muffins. Made with aromatic cinnamon, ginger, nutmeg, and cloves, these treats offer a warm, spiced bite in every muffin. Pumpkin puree adds natural sweetness and tenderness, while whole wheat flour delivers a hearty texture. Each muffin is decorated with cheerful chocolate jack-o'-lantern faces, perfect for Halloween parties or fall events. Simple to prepare, these muffins come together quickly and make a delightful vegetarian dessert option. Serve them with chai or cider for an extra cozy touch.

Updated on Fri, 10 Oct 2025 09:14:00 GMT
Golden whole wheat pumpkin muffins, spiced aroma, decorated with chocolate faces for a fall treat. Save
Golden whole wheat pumpkin muffins, spiced aroma, decorated with chocolate faces for a fall treat. | dashnosh.com

These whole wheat pumpkin muffins bring autumn into your kitchen with cozy spices and cheerful faces perfect for festive gatherings and afternoon snacks.

I started making them every October to celebrate cooling weather and my kids love helping with the silly decorations.

Ingredients

  • Whole wheat flour: gives a hearty texture and nutty flavor look for freshly milled or stone-ground when possible
  • Baking powder and baking soda: provide just the right lift for a tender crumb choose aluminum-free for a clean taste
  • Salt: balances sweet spices and brings out depth select sea salt or kosher for best results
  • Ground cinnamon ginger nutmeg and cloves: combine for classic autumn warmth check freshness the aromas fade with age
  • Pumpkin puree: adds intense color and moisture canned puree with just pumpkin and no other additives is ideal
  • Vegetable oil or melted coconut oil: keeps muffins soft and moist use light tasting options for best results
  • Brown and granulated sugar: together give balanced sweetness and a rich background choose fine or unrefined sugar for deeper flavor
  • Eggs: help bind and lift the batter opt for local or pasture raised if available
  • Vanilla extract: rounds out spice notes pure extract gives the best aroma
  • Milk (dairy or plant based): makes the batter smooth use whole or oat milk for extra richness
  • Mini chocolate chips or melted dark chocolate for decorating faces: buy good quality chocolate for the easiest piping
  • Green candies or pumpkin seeds: can double as decorative stems I like using roasted pumpkin seeds for crunch

Instructions

Prep and Line:
Set your oven to three hundred fifty degrees Fahrenheit or one hundred seventy five degrees Celsius. Prepare a twelve-cup muffin tin with paper liners or a thin coating of oil to keep muffins easy to remove and cleanup a breeze.
Mix Dry Ingredients:
Combine whole wheat flour baking powder baking soda salt and all four spices in a large bowl. Use a whisk to aerate and blend evenly. Taking a minute to whisk well prevents clumps and ensures spices are distributed for balanced flavor in every bite.
Mix Wet Ingredients:
In a separate bowl whisk together pumpkin puree oil brown sugar granulated sugar eggs vanilla extract and milk. Blend until mixture is silky smooth. Avoid lumps by making sure all wet ingredients are room temperature before mixing.
Combine Wet and Dry:
Pour the wet mixture into the dry ingredients. Stir gently with a spatula until just combined. Do not overmix as this can create dense muffins. Tiny streaks of flour are okay they will finish absorbing as muffins bake.
Fill Muffin Cups:
Evenly spoon the batter into the prepped muffin tin filling each cup about three quarters full. Uniform filling means even baking and nice muffin tops ready for decorating.
Bake the Muffins:
Slide the tin into the oven and bake for between twenty and twenty two minutes. Muffins should rise and set look for golden tops. Insert a toothpick into the center of a muffin when it comes out clean they are ready.
Cool and Remove:
Let the muffins sit in the tin for five minutes to set up slightly. Use a spatula to carefully lift each onto a wire rack. Cooling completely ensures decorations stay neat.
Decorate Faces:
Once muffins are cool use melted chocolate in a piping bag or a toothpick (or mini chocolate chips) to make jack-o-lantern faces on top. Press a green candy or pumpkin seed into each for the stem. Get creative with smiles and squiggles the kids will love helping.
Close-up of moist whole wheat pumpkin muffins showcasing a simple, delicious homemade autumn dessert. Save
Close-up of moist whole wheat pumpkin muffins showcasing a simple, delicious homemade autumn dessert. | dashnosh.com

Pumpkin puree is my secret to keeping muffins super soft and vibrant orange. I once made these with fresh roasted pumpkin and the flavor was unforgettable. My family looks forward to decorating a batch together each Halloween and it has become a cozy tradition.

Storage Tips

Keep muffins in an airtight container at room temperature for up to three days. For longer storage refrigerate up to a week. Freeze muffins individually wrapped for up to two months so you always have a festive treat on hand.

Ingredient Substitutions

Swap coconut oil for a subtle nutty flavor or canola for a neutral bakery taste. Use almond milk or oat milk to keep the recipe dairy free. Substitute one flax egg per egg for vegan muffins that still have a tender bite.

Serving Suggestions

Serve muffins warm with spiced chai or hot apple cider for an autumn snack. Add a dollop of cream cheese frosting for special occasions. At Halloween parties let everyone decorate their own muffins.

Cultural and Seasonal Context

Pumpkin muffins are a classic American autumn dessert loved for their hearty flavor and versatility. Decorating them as jack-o-lanterns is a playful touch inspired by the Halloween tradition that brings joy to kids and adults alike.

Warm, baked whole wheat pumpkin muffins cooling on a rack, ready to enjoy with cider. Save
Warm, baked whole wheat pumpkin muffins cooling on a rack, ready to enjoy with cider. | dashnosh.com

Try mixing in half a cup of chopped walnuts or pecans for extra crunch. Add a handful of dried cranberries for bursts of tartness and color. Use homemade pumpkin puree for a richer deeper taste.

Kitchen Q&A

How do I achieve moist muffins?

Use pumpkin puree, oil, and avoiding overmixing helps keep muffins tender and moist.

Can I substitute oil options?

Yes, you can use vegetable or melted coconut oil for subtle flavor variations and moisture.

Are these suitable for vegetarians?

Yes, these muffins are vegetarian-friendly, containing eggs and milk but no meat ingredients.

How do I create jack-o'-lantern faces?

Use melted chocolate or mini chocolate chips to decorate cooled muffins, piping or drawing faces with a toothpick.

Can I add nuts for extra texture?

Yes, fold in chopped walnuts or pecans with the batter for added crunch and flavor.

What spices give these muffins their flavor?

Cinnamon, ginger, nutmeg, and cloves blend together for a cozy, autumnal taste profile.

Whole Wheat Pumpkin Muffins

Tender whole wheat muffins blend pumpkin and cozy spices, topped with chocolate faces for autumn celebrations.

Prep Duration
20 min
Cook Duration
22 min
Complete Duration
42 min
Created by Tyler Morgan

Recipe Type Sweet & Simple Treats

Skill Level Easy

Cultural Heritage American

Output 12 Portion Size

Nutritional Categories Meat-Free

What You'll Need

Dry Ingredients

01 1 3/4 cups whole wheat flour
02 1 teaspoon baking powder
03 1/2 teaspoon baking soda
04 1/2 teaspoon salt
05 1 1/2 teaspoons ground cinnamon
06 1/2 teaspoon ground ginger
07 1/4 teaspoon ground nutmeg
08 1/4 teaspoon ground cloves

Wet Ingredients

01 1 cup canned pumpkin puree
02 1/2 cup vegetable oil or melted coconut oil
03 1/2 cup packed brown sugar
04 1/4 cup granulated sugar
05 2 large eggs
06 1 teaspoon vanilla extract
07 1/4 cup milk

Decorations

01 1/2 cup mini chocolate chips or melted dark chocolate
02 Small green candies or pumpkin seeds, optional

Method

Step 01

Prepare Baking Equipment: Preheat oven to 350°F (175°C). Line a 12-cup muffin tin with paper liners or lightly grease each cavity.

Step 02

Combine Dry Ingredients: In a large bowl, whisk together whole wheat flour, baking powder, baking soda, salt, cinnamon, ginger, nutmeg, and cloves until evenly blended.

Step 03

Mix Wet Ingredients: In a separate large bowl, whisk together pumpkin puree, oil, brown sugar, granulated sugar, eggs, vanilla extract, and milk until homogenous and smooth.

Step 04

Incorporate Mixtures: Add the wet ingredient mixture to the dry ingredients. Gently fold until just combined, taking care not to overmix.

Step 05

Fill Muffin Tin: Evenly distribute the batter among the prepared muffin cups, filling each about three-quarters full.

Step 06

Bake Muffins: Bake for 20 to 22 minutes, or until a toothpick inserted into the center of a muffin emerges clean.

Step 07

Cool and Decorate: Allow muffins to cool in the tin for 5 minutes before transferring to a wire rack to cool completely. Once cooled, decorate tops with melted chocolate or mini chocolate chips to create jack-o'-lantern faces. Add small green candies or pumpkin seeds as stems, if desired.

Kitchen Tools Needed

  • 12-cup muffin tin
  • Large mixing bowls
  • Whisk
  • Spatula
  • Wire rack
  • Piping bag or toothpick for decorating

Allergy Alerts

Review ingredients carefully for potential allergens and seek professional medical guidance if concerned.
  • Contains eggs and wheat (gluten).
  • May contain dairy if cow's milk is used.
  • Chocolate and candies could contain traces of nuts or soy; review packaging for allergen information.

Nutrition Details (serving size)

Numbers shown are estimates only - consult healthcare providers for specific advice.
  • Energy: 200
  • Fats: 8 g
  • Carbohydrates: 30 g
  • Proteins: 3 g